Plant MITE

SE2850908

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9913
Sorghum bicolor
SE2850908
PIF/harbinger
To53
chromosome_5:50328957-50329238
TTA
AGAGCATCTCCAAGAGA

Secondary structure and sequence

TSD TIR

5'

3'

TT      T      G   CTA    --  ATTATATTCTAAATTATAAGATTTAGCCATTGTGTAAAATAAAAAACTCACTCAAAGCATAGAGTTCCACAACAGCCTTTGTATAGGATAGCTAGTGAGGACGACATGCTAT
  AGAGCA CTCCAA AGA   GCTA  AA                                                                                                                
  |||||| |||||| |||   ||||  ||                                                                                                                 
  TCTCGT GAGGTT TCT   CGAT  GT                                                                                                                
AT      T      G   ATA    AG  ACAACAGATCCGATAAAAATGTAAAAATTTCGTTTTCAATTTGAGGTTGTCTACACGATAGACCAAACGATTTTATCGTTCAAACGATAAGGATTTGAAAGCGAACAGTATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850908

TTAGAGCATCTCCAAGAGACTAGCTAAAATTATATTCTAAATTATAAGATTTAGCCATTGTGTAAAATAAAAAACTCACTCAAAGCATAGAGTTCCACAACAGCCTTTGTATAGGATAGCTAGTGAGGACGACATGCTATATATGACAAGCGAAAGTTTAGGAATAGCAAACTTGCTATTTTAGCAAACCAGATAGCACATCTGTTGGAGTTTAACTTTTGCTTTAAAAATGTAAAAATAGCCTAGACAACATGGATAGCATATCTGTTGGAGTTGCTCTTA

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