Plant MITE

SE2850910

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9915
Sorghum bicolor
SE2850910
PIF/harbinger
To64
chromosome_3:58181563-58182205
TTA
AGAGCATCTCCAAGGGCTTTGCAAACAAACTTTGCATT

Secondary structure and sequence

TSD TIR

5'

3'

TT                -         CA  C        ----------              AAA  G AGAAAATACCCCTCCAATGGTTTTGCAAATAAGGTTTGCAATTTGGTTAACTTTGCAAATAGAGGTTGAGGCTTTACATATATGCAAACCTTCCCACCACTTTGCATCTACAATTTCGGCCTTCCACGTCGGACTCCGTCCCCCCGGCCACGTCTGGACGACGTACGCGGCCACGGCGCGGGAACGGAGGTGGACCTTTACTCACGGGGACCTTCCCTCGGAGGAGGACAGAGGTGGACGGAGCCGAACTGACGCGA
  AGAGCATCTCCAAGGG CTTTGCAAA  AA TTTGCATT          GCCCTATTTGCAAA   GA T                                                                                                                                                                                                                                                                 
  |||||||||||||||| |||||||||  || ||||||||          ||||||||||||||   || |                                                                                                                                                                                                                                                                  
  TCTCGTAGAGGTTCCC GAAACGTTT  TT AAACGTAA          ACGTTTCAGGGTTT   GA G                                                                                                                                                                                                                                                                 
AT                T         AC  A        ACCACAATAA              ---  - TAAACGTTTCAGATTTTTACCAGGTTGAGGTTCCCTGAAACGTAAATCTGAACCGTTTGGGTTTCACACCTGGGGTGGAGATTTAAAAAAAAGTGGCTAGCGCGGGCGCGCAAAAAAAGGGAAGCGCGGTAAAACTGCATGCAGCACACACGGTCAGCGGCGGGTCCGGTTCAGCGGCGGTCAACGGCGGGCCGGGTCCAGAAGCGCGGTCAGCAGCGGGTCGGGTCCGGCGCAAGCAGCAAGCAGCGGCAGCAGCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850910

TTAGAGCATCTCCAAGGGCTTTGCAAACAAACTTTGCATTGCCCTATTTGCAAAAAAGAGTAGAAAATACCCCTCCAATGGTTTTGCAAATAAGGTTTGCAATTTGGTTAACTTTGCAAATAGAGGTTGAGGCTTTACATATATGCAAACCTTCCCACCACTTTGCATCTACAATTTCGGCCTTCCACGTCGGACTCCGTCCCCCCGGCCACGTCTGGACGACGTACGCGGCCACGGCGCGGGAACGGAGGTGGACCTTTACTCACGGGGACCTTCCCTCGGAGGAGGACAGAGGTGGACGGAGCCGAACTGACGCGAACGACGACGGCGACGAACGACGAACGCGGCCTGGGCTGGGCGACGACTGGCGCGAAGACCTGGGCCGGGCGGCAACTGGCGGCGACTTGGCCTGGGCGGCGACTGGCACACACGACGTACGTCAAAATGGCGCGAAGGGAAAAAAACGCGCGGGCGCGATCGGTGAAAAAAAATTTAGAGGTGGGGTCCACACTTTGGGTTTGCCAAGTCTAAATGCAAAGTCCCTTGGAGTTGGACCATTTTTAGACTTTGCAAATGAGTTTGGGACTTTGCAAATAACACCAAATGCAAAATTCATTTGCAAAGTCCCTTGGAGATGCTCTTA

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