SE2850911

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9916
  • Sorghum bicolor
  • SE2850911
  • PIF/harbinger
  • To3
  • chromosome_10:2763666-2763914
  • TAA
  • AGGCCTTGTTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             AT   -    ---  TTTTGGATTTCGCTACTGTAGCACTTTCGTTTGTTTGTGGTAAATATTGTCCAATCATAGACTAACTAGGTTCAAAAGATTCATCTCGCGATTTACA
  AGGCCTTGTTTAG  GTG AAAT   TT                                                                                                 
  |||||||||||||  ||| ||||   ||                                                                                                 G
  TCCGGAACAAATC  AAG GTGG   TA                                                                                                 
AA             --   T    TTT  GGTTTTTCAAAAGTTCTAAGAGACAGTGTAGCTTAGAATGCCGTGTACGTACTTCGTAATTTATATCTACTTTTATTTTTGATTAGTGTGTCAAACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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