SE2810913

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9918
  • Sorghum bicolor
  • SE2810913
  • Tc1/Mariner
  • St35
  • chromosome_9:48751855-48752272
  • TA
  • TACTCCCTCCGTCCATAAAATA

Secondary structure and sequence

TSD    TIR
5'



3' 
                      CTACAA      GA       ---GTAACAA       GGCAAATGACCAAAATACCCCTATAATTGATTTGACATTACACTGCACCAAAGTTCACGTTCACAATCATTTGGCACTAAAAAATTGCAGCTAGAGTACACGTGTCCATACATAAGATTGACTCAAGTTCTGGCCAGAAGCCTCTAGAAACAGG
TACTCCCTCCGTCCATAAAATA      TTGTAG  CCAGGAG          GGACCAT                                                                                                                                                          
||||||||||||||||||||||      ||||||  |||||||          |||||||                                                                                                                                                           
ATGAGGGAGGCAGGTGTTTTAT      AACGTT  GGTCCTC          AGGTTGT                                                                                                                                                          
                      ------      -A       AAGTTTTAAA       TTTTTACGATTTCATCGGATGATCCCGGATGGCCGGATCCCACCCCTGGGTGTAGGTGTCGTGGTGGGTCTGGCGACGGTCGAGTGTGTGTTCTGAACCCGTACCAAGTCAAATTTAAAACATAATCCGCATCCCTTCCAAACCCACAAAGAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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