Plant MITE

SE2810917

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9922
Sorghum bicolor
SE2810917
Tc1/Mariner
St9
chromosome_1:3501742-3502003
TA
TACTCCCTCCATCCCAAATACAAGTCATTCCAAGAATCTTGGAGAATCAAAGTATCTCAAGTTTGACCAAAATTATA

Secondary structure and sequence

TSD TIR

5'

3'

                   -AC                        A   A                     A     GAAAAAATTACA  G A            --   - ATATACTATGAAAATATAA
TACTCCCTCCATCCCAAAT   AAGTCATTCCAAGAATCTTGGAGA TCA AGTATCTCAAGTTTGACCAAA TTATA            AA A TTATGACATCAA  ATA G                   
|||||||||||||||||||   |||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||            || | ||||||||||||  ||| |                    
ATGAGGGAGGTAGGGTTTA   TTCAGTAAGGTTCTTAGAACCTCT AGT TTGTAGAGTTCAAACTGGTTT AATAT            TT T AATACTGTGGTT  TTC T                   
                   ATA                        C   G                     A     ACTATCCTATTA  G A            GA   A AGTAATCTAAGAAGTAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810917

TACTCCCTCCATCCCAAATACAAGTCATTCCAAGAATCTTGGAGAATCAAAGTATCTCAAGTTTGACCAAAATTATAGAAAAAATTACAAAGAATTATGACATCAAATAGATATACTATGAAAATATAATTAATGAAGAATCTAATGATACTTAGTTGGTGTCATAAATGTTATTATCCTATCATATAAATTTGGTCAAACTTGAGATGTTGTGACTCTCCAAGATTCTTGGAATGACTTATAATTTGGGATGGAGGGAGTA

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