SE2850921

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9926
  • Sorghum bicolor
  • SE2850921
  • PIF/harbinger
  • To11
  • chromosome_4:7153668-7154022
  • TAA
  • AGGTGGTGTTTTGTTGTAGGGACTAAAGTTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA    GG     T   G -AGG A     G    ATAGG      A         ATATG G   GTC          TC   T   AATTAATAGAAAAACAAATTACAGATTTTGTCAGTACTCCACGAGACGAATTTGGTAAGCCTAATTAATCCATCATTAGCACATGTGTTACTG
  AGGT  TGTTT GTT T    G CTAAA TTTA     TATCAT TCGGATGTT     G GTG   CATGGGGTAT  GGA ACT                                                                                             
  ||||  ||||| ||| |    | ||||| ||||     |||||| |||||||||     | |||   ||||||||||  ||| |||                                                                                              
  TCCG  GCAAA CAA G    C GATTT AAAT     ATAGTA AGCCTACAA     T TAC   GTATTTCATA  ATT TAT                                                                                             
AA    GG     C   G ACGG -     A    GAGGG      A         -ACTG G   -GC          --   -   ATCTGATAAATGCTTTGATCTTTATATCGATCTCTGATTAAACGCTCTGCTAAAAATTTCGAATTAATCAAGTACTAATCTGTGATTAACGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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