Plant MITE

SE2830923

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9928
Sorghum bicolor
SE2830923
hAT
Hat62
chromosome_1:49061927-49062121
TTGTCAAC
TTGTCAACCAGCGACGGA

Secondary structure and sequence

TSD TIR

5'

3'

    T    C  C      GCCAAC  T   GTTGGTGGGGCTCCAGCCCCCCCTACGGCCGTAGAACCCACGTAGCCCCCCTTAGCCCCTCCTACAAAT
 TTG CAAC AG GACGGA      GG GGG                                                                     
 ||| |||| || ||||||      || |||                                                                     T
 AAC GTTG TC CTGCTT      TC TTT                                                                     
C   T    -  A      ---AGA  -   TTATAAATCCCCTCCGAAGACGATGGAATTCTATTGAAGTCGGGGAAGAATTTCTCGTAGTTACTATTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830923

TTGTCAACCAGCGACGGAGCCAACGGTGGGGTTGGTGGGGCTCCAGCCCCCCCTACGGCCGTAGAACCCACGTAGCCCCCCTTAGCCCCTCCTACAAATTTTTATCATTGATGCTCTTTAAGAAGGGGCTGAAGTTATCTTAAGGTAGCAGAAGCCTCCCCTAAATATTTTTCTAGATTCGTCACTGTTGTCAAC

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