Plant MITE

SE2850931

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9936
Sorghum bicolor
SE2850931
PIF/harbinger
To11
chromosome_8:49081533-49081769
TTA
AGGGGGTGTTTAGTT

Secondary structure and sequence

TSD TIR

5'

3'

TT           A   GGGA        G  TAACAGG      A     TT   TTTATTTAAAAATTATTGTTC  -  A  GACTAATTAGGTTTAAAAGATTCCTCTCGCAAATTACTCTCTAGATGTG
  AGGGGGTGTTT GTT    TTGGTAAA TT       TACTGT GCATT  CGT                     AA TC TA                                                 
  ||||||||||| |||    |||||||| ||       |||||| |||||  |||                     || || ||                                                 T
  TCCCCCACAAA CAA    GGCCATTT AA       ATGGCA CGTAG  GTA                     AC TA CA                                                 
AT           C   AAGA        G  -------      -     -T   ---------------------  T  -  AACCTGTGTATGTACCTCATGATTTACATCTGATAAATATTTTGATTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850931

TTAGGGGGTGTTTAGTTGGGATTGGTAAAGTTTAACAGGTACTGTAGCATTTTCGTTTTATTTAAAAATTATTGTTCAATCATAGACTAATTAGGTTTAAAAGATTCCTCTCGCAAATTACTCTCTAGATGTGTTTTTAGTTTTATAAATAGTCTACATTTAGTACTCCATGTATGTGTCCAAACATTCAATGTGATGCACGGTAAAGTTTACCGGAGAAAACCAAACACCCCCTTA

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