Plant MITE

SE2850936

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9941
Sorghum bicolor
SE2850936
PIF/harbinger
To1
chromosome_4:9968591-9968828
ATA
GGCCTTGTTTAGTTCGCAAAAATTT

Secondary structure and sequence

TSD TIR

5'

3'

ATA              C          TC    -----  --- CCCGTCACATCGAATCTTTGGTCGCATGCATGAAGCATTAAATATAGATAAAAATAAAAACTAATCGCACAGTTTACCT
   GGCCTTGTTTAGTT GCAAAAATTT  AAGA     TT   C                                                                               
   |||||||||||||| ||||||||||  ||||     ||   |                                                                                
   CCGGAACAAATCAA CGTTTTTGAA  ACCA     CG   A                                                                               
ATA              C          --    AAAAC  ATA CATCGTGAAAGCAAAAATAAACTGTTTGTAACAGGTTAGTACCTCATTGATCCGAGTTTTCTAAGTAGAGTGTTTAATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850936

ATAGGCCTTGTTTAGTTCGCAAAAATTTTCAAGATTCCCCGTCACATCGAATCTTTGGTCGCATGCATGAAGCATTAAATATAGATAAAAATAAAAACTAATCGCACAGTTTACCTGTAATTTGTGAGATGAATCTTTTGAGCCTAGTTACTCCATGATTGGACAATGTTTGTCAAATAAAAACGAAAGTGCTACAATAGCCAAAAACCAAAGTTTTTGCCAACTAAACAAGGCCATA

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