SE2850938

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9943
  • Sorghum bicolor
  • SE2850938
  • PIF/harbinger
  • To1
  • chromosome_10:52569501-52569749
  • TTA
  • AGGCCTTGTTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT             CT   AA      TTGGATTTTGACACTGTAGCACTTTCGTTTGTATTTGACAATTATTGTCCAACTATAGACTAACTAGGCTCAAAAGATTCGTCTCGTAAATTACAGAC
  AGGCCTTGTTTAG  GTG  AAGATT                                                                                                  
  |||||||||||||  |||  ||||||                                                                                                   
  TCCGGAACAAATC  AGT  GGGGCT                                                                                                  
AT             -C   --      TTAAGTTTTTGAAAAATTCTAAGGGGCAGTGTAGTTTAGAACACCGTGTACGTACTTCGTGATTTATATCTGCCTTTATTTTTAATTAACGTGTCAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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