SE2850943

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9948
  • Sorghum bicolor
  • SE2850943
  • PIF/harbinger
  • To1
  • chromosome_4:7948237-7948483
  • TTA
  • AGGCCTTGTTTAGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               -    TTTTTTTGGATTTTGACACTTTGGCACTTTCGTTTTTATTTGACAAACATTATCCAATTATGGAGCAACTAAGTTTAAAAGATTTGTCTCGTGATTTACAAG
  AGGCCTTGTTTAGAT CAAA                                                                                                      
  ||||||||||||||| ||||                                                                                                       
  TCCGGAACAAATCTA GTAC                                                                                                      
AT               T    GTTTTTGGGTTTTGAAATGTTCTAAAGGGCAGTGTAGCTTAGAACGCCGTGTACGTACCTTGTAATTTACATCTATTTTTTCTATTGATTATCGTGTCAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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