Plant MITE

SE2850944

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9949
Sorghum bicolor
SE2850944
PIF/harbinger
To1
chromosome_2:6046806-6047054
TAA
AGGCCTTGTTTAGTTCA

Secondary structure and sequence

TSD TIR

5'

3'

TA               -  ----CCCCAAA     AAA   - TTC AGATTTCCCGTCACATCGAATCTTGCGGCACATGTATGGAGCATTAAATATAGATGAAAATAAAAACTAATTACACAGTTTG
  AGGCCTTGTTTAGTT CA           AACTA   ACT T   A                                                                                  
  ||||||||||||||| ||           |||||   ||| |   |                                                                                  C
  TCCGGAACAAATCAA GT           TTTTT   GCT C   G                                                                                  
AA               A  TTTTTTAAATC     ---   G --- ATATCGGAAAAGCAAAAATAAACTGTTTGTAATAGGTTAATACCTCATTGATCTGAATTTTCTAAGCAGAGCGCTAAATGTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850944

TAAGGCCTTGTTTAGTTCACCCCAAAAACTAAAAACTTTTCAAGATTTCCCGTCACATCGAATCTTGCGGCACATGTATGGAGCATTAAATATAGATGAAAATAAAAACTAATTACACAGTTTGCCTGTAAATCGCGAGACGAATCTTTTAAGTCTAGTTACTCCATAATTGGATAATGTTTGTCAAATAAAAACGAAAAGGCTATAGCGTCGTTTTTCTAAATTTTTTTGAAACTAAACAAGGCCTAA

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