SE2850945

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9950
  • Sorghum bicolor
  • SE2850945
  • PIF/harbinger
  • To50
  • chromosome_3:59321155-59321446
  • TTA
  • AGAGCATCTCCAAGAGACTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT             G  A    GTATATTC             GGAATAGCAATTTTGGTGAAAAACTATCCTCCAACAGCTTCTCTAAATGGTCATCCAAATATAGCCATTGTCTATTCCGGGTTTTTCGCTAGCCAAATATAGA
  AGAGCATCTCCAA AG CTTT        TTCCTAAATGCTA                                                                                                       
  ||||||||||||| || ||||        |||||||||||||                                                                                                        
  TCTCGTAGAGGTT TC GAAA        GAGTGAGAGATTT                                                                                                       
AT             A  G    --GCTTTA             AGTAGTAAACCTCTCGGTAAACGTATTTTTAGCGAAAGATATAAAAAATGAAAGGTTGTCAAAACGATTTAGAGTACGCATGAGATCTCTCAGTAAGAGCAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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