SE2850947

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9952
  • Sorghum bicolor
  • SE2850947
  • PIF/harbinger
  • To1
  • chromosome_4:11400468-11400941
  • GAA
  • GGCCTTGTTTACTTCAAAAAA

Secondary structure and sequence

TSD    TIR
5'



3'
GAA           C   AA    -ATTTC  A                         TTATT             CC       A                                      AC       A         TTTGTTTTCA                                G                                   A                ACAA
   GGCCTTGTTTA TTC  AAAA      GG TTTCGCTACTGTAGCATTTTCGTTT     TGACAAATATTGT  AATTATA ACTAACTAGGATCAAAAGATTCGTCTCGTGATTTACAG  AAACTGT TAATTAGTT          TCTATATTTAATGTTTCATGCATGTGCCGCAA ATTCGATGTGACGGAGAATCTTGAAAACTTTTTGG TTTCGGGGTGAACTAA    
   ||||||||||| |||  ||||      || |||||||||||||||||||||||||     |||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||          |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||     
   CCGGAACAAAT AAG  TTTT      TC AAAGCGATGACATCGTGAAAGCAAA     ACTGTTTATAATA  TTAGTAT TGATTGATCCTAGTTTTCTAAGCAGAGCACTAAATGTC  TTTGACA ATTAATCAA          AGATATAAATTACAAAGTACGTACACGGTGTT TAAGCTACACTGCCTTTTAGAACTTTTGAAAAACC AAAGTCCCACTTGATT    
AAG           C   GC    CACTTT  A                         CAAAC             AA       C                                      GA       C         ---------C                                A                                   A                CCGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End