Plant MITE

SE2810953

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9958
Sorghum bicolor
SE2810953
Tc1/Mariner
St7
chromosome_1:20142044-20142306
TA
TACTCCCTCCATACCTATAAAAAAAATTATTTTGGACA

Secondary structure and sequence

TSD TIR

5'

3'

    C                A   A  A   T     ------AA           ATATTGAAAATATAAATCATAAATAACTTTTAAGTTGTTGAATTTGGAAATATGAAAACCATATGAATAGATTTGTC
TACT CCTCCATACCTATAAA AAA TT TTT GGACA        GTTTGTATCAA                                                                             
|||| |||||||||||||||| ||| || ||| |||||        |||||||||||                                                                             T
ATGA GGAGGTATGGATATTT TTT AG AAA TCTGT        CAGAGGTTTCG                                                                             
    T                C   C  C   T     CGCTATAC           GATTGAAACTGAGGAATAAAAATATTTTTATAAATAGTTTTTCACCATATACATATAAAAATACTTTCATAAAAAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810953

TACTCCCTCCATACCTATAAAAAAAATTATTTTGGACAAAGTTTGTATCAAATATTGAAAATATAAATCATAAATAACTTTTAAGTTGTTGAATTTGGAAATATGAAAACCATATGAATAGATTTGTCTTGAAAAATACTTTCATAAAAATATACATATACCACTTTTTGATAAATATTTTTATAAAAATAAGGAGTCAAAGTTAGGCTTTGGAGACCATATCGCTGTCTTAAACGACTTTCTTTATAGGTATGGAGGTAGTA

Copy Cancel