Plant MITE

SE2850956

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9961
Sorghum bicolor
SE2850956
PIF/harbinger
To43
chromosome_7:16663799-16664175
TAA
ACCGTGTGTTTGGTTGGGGGTTGGGTGGGTTGGGTTGGATCCAACACA

Secondary structure and sequence

TSD TIR

5'

3'

 TA                   -  T                 T C   A  GTTTTTAG      AGCCAACCCGTCCAGTGTTTGGTTGCACTTCTGATTTTGGGGACGGAGCCAACCCATTTTAGTGTTTGGTTGAAGAATTGGGGACAGAGCGGCTCCGTTCAGTGTTTGGTTGAAGGAATTTAGTGTT
   ACCGTGTGTTTGGTTGGGG GT GGGTGGGTTGGGTTGGA C AAC CA        GGACGG                                                                                                                               
   ||||||||||||||||||| || ||||||||||||||||| | ||| ||        ||||||                                                                                                                                
   TGGCACACAAACCAACCTC CG CCCGCTCGGCCCAGCCT G TTG GT        AGGACA                                                                                                                               
AAA                   T  C                 C C   A  -------A      CCGACAAACCAACCTCCTACTCTCCCAACCCAACCGAGGTCCCACCTTATAAGGAGAGTCTACGCCCAACCTGAGCAGGCAGTTTTAGACCGCCTGCCTCGGCGAGGTCGACCCAACCGAGGGTGGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850956

TAACCGTGTGTTTGGTTGGGGGTTGGGTGGGTTGGGTTGGATCCAACACAGTTTTTAGGGACGGAGCCAACCCGTCCAGTGTTTGGTTGCACTTCTGATTTTGGGGACGGAGCCAACCCATTTTAGTGTTTGGTTGAAGAATTGGGGACAGAGCGGCTCCGTTCAGTGTTTGGTTGAAGGAATTTAGTGTTTGGTGGGAGCCAACCCAGCTGGAGCGGCTCCGTCCGCCAGATTTTGACGGACGAGTCCAACCCGCATCTGAGAGGAATATTCCACCCTGGAGCCAACCCAACCCTCTCATCCTCCAACCAAACAGCCACAGGAATGAGTTCGCTCCGACCCGGCTCGCCCCGCTCTCCAACCAAACACACGGTAAA

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