SE2850962

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9967
  • Sorghum bicolor
  • SE2850962
  • PIF/harbinger
  • To4
  • chromosome_5:19240606-19240853
  • TTA
  • AGGCCTTGTTTAGTTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   C             ------TA        TACAAATTTTTTCAGATTCCCGTCACATCGAATCTGGTGGCACATGCATGGAACATTAAATATAGATAAAAACAATAACTAATTACACAATT
  AGG CTTGTTTAGTTTC        AAAAAATT                                                                                            
  ||| |||||||||||||        ||||||||                                                                                             
  TCC GAACAAATCAAAG        ACCGTTTT                                                                                            
AT   A             TTTTAAAA        GTTTGTGACATAGTTAAAGCAAACATAAACTGTTTATAACAGGTTAGTACCTGATTGATCCGAGTTTTTTAAGCAGAGCGTTTAATGTCAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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