SE2850965

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9970
  • Sorghum bicolor
  • SE2850965
  • PIF/harbinger
  • To50
  • chromosome_7:9155890-9156182
  • TTA
  • AGAGCATCTCCAACAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                ACTTTGTATAT           A   GGAATAGCAATTTTGGTGAAAAACTACCCTCCAACAGCTTCTCTAAATGGTCATCCAAATATAGCCATTGTCTATTCCGGGTTTTTCGCTAGCCAAATATAGAAGACG
  AGAGCATCTCCAACAG           TCTTTCTAAAT CTA                                                                                                            
  ||||||||||||||||           ||||||||||| |||                                                                                                            A
  TCTCGTAGAGGTTGTC           GGAAAGATTTA GAG                                                                                                            
AT                -----------           -   TGAGAGATTTAGTAGTAAACCTCTCGGTAAACGTATTTTTAGCGAAAGATATAAAAAAATGAAAGGTTGTCAAAACGATTTAGAGTACGCGTGAGATCTCTCAGTAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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