SE2850967

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9972
  • Sorghum bicolor
  • SE2850967
  • PIF/harbinger
  • To75
  • chromosome_1:3707875-3708210
  • TAA
  • AGGGCTTGTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA    C       ACAAA   C   T     A  A   CTGTTTTTTTAGAAAATAGCTTCATGAGTGACTTTCTAGATGAAGCTGAGCTGTTTTGGAAAAAGTGTTTGGCAAAATAGCTTCACCAACTACTTCATGCATAGTTGAGAGAGAGAAATGAGGGAGAAGCTG
  AGGG TTGTTTG     GCT AAC TCACT GT AAG                                                                                                                                    
  |||| |||||||     ||| ||| ||||| || |||                                                                                                                                    C
  TCCC GACAAAC     TGT CGA GTGTT GT CGA                                                                                                                                    
AA    A       ---CA   -   -     -  -   AGTACTCGACAACACTCGACAAAAAAAAAAAACGGTTTGTGAATAAAGGTTTTGTCGAAGTACCCACTTCGACAAAAAGGAGAGGAGAGTGTTTCTGTATTCAACCTACTTCGACCTTTTTTCATCGAATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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