Plant MITE

SE2850968

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9973
Sorghum bicolor
SE2850968
PIF/harbinger
To1
chromosome_1:72248367-72248604
TAA
AGGCCTTGTTCAGTTCGCGAAAAATTTTAGATTTC

Secondary structure and sequence

TSD TIR

5'

3'

TA          C    CG     A      -          CTGTAGCACTTTCGTTTTTATTTGACAATTATTATCTAATCATAGACTAACTAGGCTTAAAAGATTCGTCTAGCAAA
  AGGCCTTGTT AGTT  CGAAA ATTTTA GATTTCGCTA                                                                             
  |||||||||| ||||  ||||| |||||| ||||||||||                                                                             T
  TCCGGAACAA TCAA  GTTTT TAAAGT CTAAGGGGCA                                                                             
AA          A    AA     A      T          GTATAGCTTAGAATGCCATGTACATATTTTGTAATTTATATCTATTTTTTCTATTGATTAACGTGTCAAATGGATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850968

TAAGGCCTTGTTCAGTTCGCGAAAAATTTTAGATTTCGCTACTGTAGCACTTTCGTTTTTATTTGACAATTATTATCTAATCATAGACTAACTAGGCTTAAAAGATTCGTCTAGCAAATTATAGGTAAACTGTGCAATTAGTTATCTTTTTTATCTATATTTAATGTTTTATACATGTACCGTAAGATTCGATATGACGGGGAATCTTGAAATATTTTGAAAACTAAACAAGGCCTAA

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