SE2850969

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9974
  • Sorghum bicolor
  • SE2850969
  • PIF/harbinger
  • To61
  • chromosome_10:53827817-53828054
  • TGA
  • AGGCCTTGTTTAGTTTTAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TG      T        -      --AAATTT      TTC   TCACATCGAATCTTGCGACACATGTATGGAGTATTAAATATAGATGAAAACAAAAATTAATTGCACAGTTTACCTGTA
  AGGCCT GTTTAGTT TTAAAA        CAAGAT   TCG                                                                              
  |||||| |||||||| ||||||        ||||||   |||                                                                               
  TCCGGA CAAATCAA GGTTTT        CTTTGC   GAT                                                                              
AG      C        C      AAAAAATC      ---   GACATCGTAACAGCAAACATACACTATTTATAACAGGTTAATATTTCATTCATCCGAATATTCTAAGCAGAACATTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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