Plant MITE

SE2850972

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9977
Sorghum bicolor
SE2850972
PIF/harbinger
To11
chromosome_8:51516836-51517073
TTA
AGGTGGTGTTTGGTTTGGGTGGTAAAGTTTA

Secondary structure and sequence

TSD TIR

5'

3'

TT    GG           -G   G         ACAG  A    A   -GTTT     TATTT    ATCATTATCCAATCATAGACTAATTTTAGGCTTAAAAGATTCGTCTCTCAAATTA
  AGGT  TGTTTGGTTTG  GTG TAAAGTTTA    GT TTGT GCA     TGTTT     GATA                                                       
  ||||  |||||||||||  ||| |||||||||    || |||| |||     |||||     ||||                                                        
  TCCG  GCAAACCAAAC  CAC ATTTCAAAT    CA GGCA TGT     ACAAA     CGTG                                                       
AT    GG           GG   A         --GG  -    G   AGCTT     ---CC    TATGTACGTCATGATTTATATCTGATAAATGCTTTGATTTTTGTGTCGATCTCTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850972

TTAGGTGGTGTTTGGTTTGGGTGGTAAAGTTTAACAGGTATTGTAGCAGTTTTGTTTTATTTGATAATCATTATCCAATCATAGACTAATTTTAGGCTTAAAAGATTCGTCTCTCAAATTACTCTCTAGCTGTGTTTTTAGTTTCGTAAATAGTCTATATTTAGTACTGCATGTATGTGCCCAAACATTCGATGTGACGGACGGTAAACTTTAACACGGCAAACCAAACGGGGCCTTA

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