SE2850975

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9980
  • Sorghum bicolor
  • SE2850975
  • PIF/harbinger
  • To1
  • chromosome_5:54187588-54187836
  • TAA
  • AGGCCTTGTTTAGTTCCGAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA            G ----       AAAT      ----        CTGTAGCACTTTCGTTTTTATTTGACAAATATTATCCAATCATGAACTAACTAGTATCAAAAGATTCGTCTCGTGATTTAC
  AGGCCTTGTTTA T    TCCGAAA    TTCAGA    TTTCGCTA                                                                                 
  |||||||||||| |    |||||||    ||||||    ||||||||                                                                                 A
  TCCGGAACAAAT A    AGGCTTT    AGGTTT    AAAGTTCT                                                                                 
AA            G AATG       ----      TTCA        AAGAGGCAGTGTAGCTTAGAACGCTGTGTACGTACTTCGTAATTTATATCTGCTTTTGTTTTTGATTAATGTGTCAAACAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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