SE2850980

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9985
  • Sorghum bicolor
  • SE2850980
  • PIF/harbinger
  • To72
  • chromosome_3:52863744-52863992
  • TAA
  • AGGCCTTGTTTAGTTTGAAAAAAAAATTGCAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                G      AAA         GAACAC   A --  CTTTTGTTTGTATTTAACAAATTTTATCTAATTACAGACTAATTAGGCTTAAGAGATTTGTCTCGCAAATTATAG
  AGGCCTTGTTTAGTTT AAAAAA   TTGCAAAAT      TGT G  CA                                                                           
  |||||||||||||||| ||||||   |||||||||      ||| |  ||                                                                            
  TCCGGAGCAAATCAAA TTTTTT   AACGTTTTG      TCT A  AG                                                                           
AA                G      -AA         -AAAAA   - AA  ACAATATAGCTTAGAACGCCGTGTACGTACTTCGTAATTTATATTTATTTTCTTTATTGATTGAAATGTCAAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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