Plant MITE

SE2850984

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9989
Sorghum bicolor
SE2850984
PIF/harbinger
To96
chromosome_1:9499470-9499690
AAA
GGGGATGTTTGGATTATAGCCATCATGCGCCACGCCACACTTTATGGCTGCCACAGCTCCTGAGGATGATGT

Secondary structure and sequence

TSD TIR

5'

3'

AAA   G                  T   -GC         C   TTA    --       G  C   A  A      -------      GGTGATTTATCTTTGGCTGCCATAACT
   GGG ATGTTTGGATTATAGCCA CAT   GCCACGCCA ACT   TGGC  TGCCACA CT CTG GG TGATGT       TTGGTT                           
   ||| |||||||||||||||||| |||   ||||||||| |||   ||||  ||||||| || ||| || ||||||       ||||||                           T
   CCC TACAAACCTAATATCGGT GTG   CGGTGTGGT TGA   ACCG  GCGGTGT GA GAC CC GCTACA       GCGGTG                           
AAA   G                  -   AGC         -   --C    CT       -  A   A  -      ATAACCT      TCAACACCGTCTTAAAGTCAGACACTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850984

AAAGGGGATGTTTGGATTATAGCCATCATGCGCCACGCCACACTTTATGGCTGCCACAGCTCCTGAGGATGATGTTTGGTTGGTGATTTATCTTTGGCTGCCATAACTTTTCACAGACTGAAATTCTGCCACAACTGTGGCGTCCAATAACATCGCCACAGAAGTGTGGCGTCGCCACAGTTGGTGTGGCCGAGTGTGGCTATAATCCAAACATGCCCAAA

Copy Cancel