Plant MITE

SE2830991

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9996
Sorghum bicolor
SE2830991
hAT
Hat37
chromosome_8:427106-427838
ACCAGGTT
ACCAGGTTTAAAGATGGCAAT

Secondary structure and sequence

TSD TIR

5'

3'

    A    T                 ATTTACCCACCGGGTTATGGCTGCCCATACCCTTACCCACGAGGAAATATTTTACCTACTAATTTACCCATATTCATGCACAGGTAAAAGTTCTTTCCCATACCCTTACCCATGCGGATAACGGTTACCCATGGGTTATCCTTACCCATAGATCTAAGAATGTTTACAATATCAAAATTACATGTATCAATATACCAGACTCCCAATTTTAGCCAAAGAACCACAAATCAATAATAAATTAATCAAACAAACTAGTCATACAAACACATGATCAAATAGTCTAATATAAAATCTATCGTCCGAAGTCACGAGGAATGGGGGTAGCAGCGTCCGGAGACAC
 ACC GGTT AAAGATGGCAATGGGTA                                                                                                                                                                                                                                                                                                                                                    
 ||| |||| |||||||||||||||||                                                                                                                                                                                                                                                                                                                                                    G
 TGG CCAA TTTCTACCGTTAAAGAT                                                                                                                                                                                                                                                                                                                                                    
T   A    -                 GGGCTTTGGGCTACCCATTTTTGGGATAATCCCGTTCCCATACCGATTAAAAAAGTAGGTACCCATTCATTTACCTTGTTTTCAGAATGGGTCGCCCATTCCTATACCCTAACGTAACAGGTATGGGAAATTGGGTACCCATTTAATTTGGGCTGGATTGAGATACTTAGCACCCAGTTTTAATGGTGGTGTCGGGTTCGGGTCATTTTTATATATATTACGTTGGGATCCAAAAGTAGAGGAGTAGGGTGAAGGAGGTAGGGGAGGATACGAGGGGGGGGGGGGAACGCCACGACGTAGAGTGCGTCAGTACTTGCGTCTCTGGCGTCGGCGCTCAACG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830991

ACCAGGTTTAAAGATGGCAATGGGTAATTTACCCACCGGGTTATGGCTGCCCATACCCTTACCCACGAGGAAATATTTTACCTACTAATTTACCCATATTCATGCACAGGTAAAAGTTCTTTCCCATACCCTTACCCATGCGGATAACGGTTACCCATGGGTTATCCTTACCCATAGATCTAAGAATGTTTACAATATCAAAATTACATGTATCAATATACCAGACTCCCAATTTTAGCCAAAGAACCACAAATCAATAATAAATTAATCAAACAAACTAGTCATACAAACACATGATCAAATAGTCTAATATAAAATCTATCGTCCGAAGTCACGAGGAATGGGGGTAGCAGCGTCCGGAGACACGGCAACTCGCGGCTGCGGTCTCTGCGTTCATGACTGCGTGAGATGCAGCACCGCAAGGGGGGGGGGGGAGCATAGGAGGGGATGGAGGAAGTGGGATGAGGAGATGAAAACCTAGGGTTGCATTATATATATTTTTACTGGGCTTGGGCTGTGGTGGTAATTTTGACCCACGATTCATAGAGTTAGGTCGGGTTTAATTTACCCATGGGTTAAAGGGTATGGACAATGCAATCCCATATCCTTACCCGCTGGGTAAGACTTTTGTTCCATTTACTTACCCATGGATGAAAAAATTAGCCATACCCTTGCCCTAATAGGGTTTTTACCCATCGGGTTTCGGGTAGAAATTGCCATCTTTAACCAGGTT

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