SE2850993

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9998
  • Sorghum bicolor
  • SE2850993
  • PIF/harbinger
  • To99
  • chromosome_3:61960137-61960416
  • TAA
  • AGGGCCTGTTTGGATCCATTAGCACTAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA      T        C                   ATA   -  ----  T  TTTAGCTAGCTAATGTTAGTAGGAGGCCGTTTGGATCCACCTGCTAATAGGTGGTTGGACAGTGAGTTGAAGGTGCATATGAATTATTA
  AGGGCC GTTTGGAT CATTAGCACTAAAAAGCTA   GCT GC    TA TT                                                                                         
  |||||| |||||||| |||||||||||||||||||   ||| ||    || ||                                                                                         G
  TCTCGG CAAACCTA GTAATCGTGATTTTTAATC   GTC AT    AT CA                                                                                         
AA      T        T                   ---   G  TTTT  -  TGATCACCTTGGTTTGTGTGGACGATTAATAATCGATCCCCCGACGATTGATAATCGAGGTAATCGACCAAACCTCAACGATTATCCAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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