SE2830999

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10004
  • Sorghum bicolor
  • SE2830999
  • hAT
  • Hat66
  • chromosome_10:6388233-6388630
  • TAGATGAG
  • ATGAGCAGGGGTGGAGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAG  GA    G         TCCCATAC   -          --------------------------TCTTG      -- TCAATTCTGGTGTGGATATCCACTGCGAATTGCATGTCTTGCGTCTATGTTTAGCGTTCACTATGGCTGATTGTGAGAGAAGCTCCTTCGGCAGGAGAAAGGTCACACTTGGACAAGTGAACCGTTATTA
   AT  GCAG GGTGGAGGA        GGC AAGGTATGGC                               CCATAC  C                                                                                                                                  
   ||  |||| |||||||||        ||| ||||||||||                               ||||||  |                                                                                                                                  T
   TA  TGTC CCGCCTCCT        TTG TTCCATACCG                               TACAGA  A                                                                                                                                  
GAG  GA    A         TCCTAATT   A          CTTCAAACATTATATCTATACTTACCATTGT      CC CGTAGTAGTAAGCCAAATGCTTTCGCACCTTTTGTGTTTACGGTTTTTAAACATAGTTTTAATTATCACAGGCCACTTCTATCAATACTCGAGTTCACCCGGAACCATTGTGTATAGTATCTCGAGTTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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