SE2851003

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10008
  • Sorghum bicolor
  • SE2851003
  • PIF/harbinger
  • To1
  • chromosome_10:53920057-53920305
  • TAA
  • AGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             T  ACTCTAAAAACTAAAAACTTTTCAAAATTTCCCGTCACA   AACC   CGGCGCATGCATGAAACATTAAATATAGATAAAAATAAAAAATAATTACACAGTTTGCCTGTAAATCACGAGACAAATC
  AGGCCTTGTTTAG TC                                       TCG    TTG                                                                               
  ||||||||||||| ||                                       |||    |||                                                                                
  TCCGGAACAAATC AG                                       GTT    TTA                                                                               
AA             T  ---------------------------------------   ----   AAAAACCCTAAAACTATGACATCGTGAAAGCAAAAATAAACTGTTTGTAACAGGTTAGTACCTCATTGATCCGAATTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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