SE2811010

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10015
  • Sorghum bicolor
  • SE2811010
  • Tc1/Mariner
  • St41
  • chromosome_1:4915300-4915700
  • TA
  • TACTCCCTCCTTTCAAAAATCTCCAGCGTATTAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
                             ATT   AATTTTTTTTTCTTCAAAA  C   - TCGTTTAAGTCTGGGACCACGCTCCTGCATCGTTCCAGGCACCCGCGTAGCTCCTCGTACGCGTACACATTCACTTCTGCAATGTTGCCCATCGCTTCAACTAGCCCCTCCGTTTCCTCCCGTTAGAATGCATACGTGAGTGCGGGCGT
TACTCCCTCCTTTCAAAAATCTCCAGCGT   AGC                   GT TCC G                                                                                                                                                     
|||||||||||||||||||||||||||||   |||                   || ||| |                                                                                                                                                      
ATGAGGGAGGAAAGTTTTTAGAGGTCGCA   TCG                   GG ACC G                                                                                                                                                     
                             AAT   -------------------  -   T CGTTACTGGTTCTTCGTACCTTTGTACGTCGGTCTTCGCGGCTAAAAGTAAATTAGCGGTACGTACAGAATTGTGAGCCGCAGGCAAGTAAACGGGCTCATTTGTGGCGACTTTTGCGGCGGCAATCGCGTGCGTTCTGGCTTGCCGCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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