SE2851014

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10019
  • Sorghum bicolor
  • SE2851014
  • PIF/harbinger
  • To4
  • chromosome_5:2856093-2856342
  • TTA
  • AGGCCTTGTTTAGTTCCAAAAATTTTTGCAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                 A        --        ---AG   T   AGCACTTTCATTTGTATTTGACAAATATTGTCCGATTATGGACTAACTAGACTCAAAAGATTCGTCTCGCAAATTACA
  AGGCCTTGTTTAGTTCC AAAATTTT  TGCAAAAT     GAA AGT                                                                              
  ||||||||||||||||| ||||||||  ||||||||     ||| |||                                                                               
  TCCGGAACAAATCAAGG TTTTAAAA  ACGTTTTA     TCT AAG                                                                              
AT                 G        AA        AAGAA   -   GGGTAGTGTAGCTTAAAACGCCGTGTACGTACCTCGTGATTTATATCTATTTTCGTTATTGATTAATGTGTCAAATGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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