Plant MITE

SE2831016

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10021
Sorghum bicolor
SE2831016
hAT
Hat35
chromosome_10:21761789-21761961
GTGCTATA
GC

Secondary structure and sequence

TSD TIR

5'

3'

  GT  TATA              -AC   AAAT  A  -A         TATAAGGAGACATACATAATTT    G  ATATAT  T    TT      AGT
    GC    CAGGGGCGAAGCCA   TCA    TC TG  TGGTGCACT                      GGTA CA      GG GAAA  TTATCA   
    ||    ||||||||||||||   |||    || ||  |||||||||                      |||| ||      || ||||  ||||||    
    CG    GTCCCCGCTTCGGT   AGT    AG AC  ACCACGTGG                      CCGT GT      TC CTTT  AATGGT   
ATAT  --TG              GCA   ----  A  GG         ----------------------    G  -CCCAT  T    TT      AAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2831016

GTGCTATACAGGGGCGAAGCCAACTCAAAATTCATGATGGTGCACTTATAAGGAGACATACATAATTTGGTAGCAATATATGGTGAAATTTTATCAAGTTAATGGTAATTTTTCTCTTACCCTGGTGCCGGTGCACCAGGCAAGATGAACGTGGCTTCGCCCCTGGTGCTATA

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