SE2851017

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10022
  • Sorghum bicolor
  • SE2851017
  • PIF/harbinger
  • To101
  • super_19:615255-615578
  • TTA
  • AGGCCTTGTTCGTTTCTATCGGATCGACC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT            T      C   TCG   -TGT     GGCCTATTCCAGGTGAATTACTGCAGCCCATTTTCAATCCAAATGAGAACTAGGGAACTAAAATGTGCATTCATTTTGGTCTGGCCTCGAACAAAAGCTGGCCTAAAACAAAAACTGGCTTCTC
  AGGCCTTGTTCG TTCTAT GGA   ACC    TTCCG                                                                                                                            
  |||||||||||| |||||| |||   |||    |||||                                                                                                                             
  TCCGGAACAAGC GAGGTG CCT   TGG    GACGG                                                                                                                            
AT            C      T   ---   TAAA     GAATTTGTCAAGGCTTGGTCCTAGTTCACCTACGTGAAGGAAGTGAGTAAGGAGGTGAACCCGATCCTTGGTTAGGCTTACCATCTTCCAGACCAAAGTAAGGCCCAGTACCTCTGATCTTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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