SE2851020

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10025
  • Sorghum bicolor
  • SE2851020
  • PIF/harbinger
  • To1
  • chromosome_2:366011-366494
  • TTA
  • AGGCCTTGTTTACTTCCCAGAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TT            ---CTT        ATTTTG         -TTAC           C   A      TA    C                       C                C          -GTCG      A                          G                            C                     C TT   -C    TT   -  GAA    ACAA
  AGGCCTTGTTTA      CCCAGAAA      CAAAATTTT     ATTCTCCGTCA ATC AATCTT  GACG ATGTATGGAGTATTAAATATAGA GAAAATAAAAACTAAT GCACAGTTTG     AAATTG CGAGACGAATCTTTTGAGTCTAGTTA TTCATGATTGGATAATATTTGTCAAATA AAACGAAAGTGCTACAGTGTC A  TCC  AAAA  TTT CA   CTAA    
  ||||||||||||      ||||||||      |||||||||     ||||||||||| ||| ||||||  |||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||     |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |  |||  ||||  ||| ||   ||||     
  TCCGGAACAAAT      GGGTTTTT      GTTTTGAAA     TAAGGGGCAGT TAG TTAGAA  CTGT TACGTACTTCATAATTTATATCT TTTTTATTTTTGATTA TGTGTCAAAC     TTTAGC GCTTTGCTTAGAAAATTCAGATCAAT AGGTACTAATCTGTTATAAACAGTTTAT TTTGCTTTCACGATGTCACAG T  AGG  TTTT  AAA GT   GATT    
AT            CTATGT        ----GA         TGTTC           A   C      TA    A                       A                A          AGACA      -                          G                            T                     T TT   TT    TT   C  --A    CCGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End