SE2851022

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10027
  • Sorghum bicolor
  • SE2851022
  • PIF/harbinger
  • To2
  • chromosome_1:5548328-5548598
  • TTA
  • AGGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT          - ACTTCCACCC     -   GTTTACTTCCACCTCAAAACCCAAAATTTTTCAAGATTCTCCGTCACATCAAATCTTTAGACGCATACATGAAGTATTAAATATAAATAAAAATAAAAACTAATTGTA
  AGGCCTCGTT T          AAAAT TTT                                                                                                            
  |||||||||| |          ||||| |||                                                                                                            C
  TCCGGCACAA T          CAAGC CTT                                                                                                            
AT          A ----------     A   CCCTTTTTAAAGCGCTGTGACATTGTGAAAGCAAACAAACACCATTAATAACAGGTTGATACCTGATTGATCCGAGTTTTCTAAGCAGAGCATTTAAGGCTGGTTTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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