SE2831025

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10030
  • Sorghum bicolor
  • SE2831025
  • hAT
  • Hat7
  • chromosome_7:4401304-4401885
  • GTAACAAA
  • CAATGATTTCAGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
GTAACAAA              CGTC   TTAATCGTGATTAATCGCGATTAATCGTCCAGGTCGCTCCTAGGATTCGATTAGGAGGCCCGACTCGATTAGTTCGACCAGAAAGCTGGTCGTCCGATTAATCGTCGATTAATCGCAATTAATCGGACGACCAGGTAAGATGGACGACCAGGCTTCTGTTTTTTTGGGCCTTTTCTAACTGGGAGTGGGCTAATGGGCTTTAAGTTTTTGGCCTGTTAGGGTTTAGATAGAATAGAGGGGCTGCAGGGGGGGTTTGGGACAGC
        CAATGATTTCAGGT    CGA                                                                                                                                                                                                                                                                       
        ||||||||||||||    |||                                                                                                                                                                                                                                                                        
        GTTACTAAAGTCCA    TGA                                                                                                                                                                                                                                                                       
AAACAATG              --AC   CCAGCTTCGACCAGCGAGATCCTGGCTGGTCCGCTAATTAGCTCTAATTAGCAGCTGGTCCCGCTAATTAGCGGGACCAGCTGGGACCAGCAGGTGGACCAGCAGGTCGATAAAGTCCCGTATATACGGATATATATATGGAGATATATATGATATATTATATGTGTTAGTTCGATCGTAGTTCTGATGTAATCACAAATCTATCACTTAATGAACACCCTCAACCAAAGAAGAGAAAAGACGTGACAGGTCTCCAGGTATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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