SE2851031

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10036
  • Sorghum bicolor
  • SE2851031
  • PIF/harbinger
  • To4
  • chromosome_5:54429458-54429694
  • TAA
  • AGGCCTTGTTTAGTTCGCAAAAATTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                              TT    C ---- C   AGCATT ----  TTTTAATTTGACAAACATTATCCAATCACGGAGTAACTAGGCTCAAAAGATTCATCTCACAAATT
  AGGCCTTGTTTAGTTCGCAAAAATTTTTGT  TTGG T    A TGT      T    CG                                                                 
  ||||||||||||||||||||||||||||||  |||| |    | |||      |    ||                                                                 A
  TCCGGAACAAATCAAGCGTTTTTAAAAATT  CTAA G    A GTG      T    TA                                                                 
AA                              --    - GGAC -   ------ AGCT  GAAACCAACGTACGTACCTCGTAATTTATATCTGTTTTTATTTTTGATTGACGTGTCAAATGGAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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