SE2851032

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10037
  • Sorghum bicolor
  • SE2851032
  • PIF/harbinger
  • To2
  • chromosome_1:17525562-17525810
  • TAA
  • AGGCCTTGTTTAGTTCCAAAATATTTTGCAAAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 -    T             GACAC  T     TTTC      --   T --    ATATTGTCCAATCATGGACTAACTAGGCTCAAAAGATTTATCTCGTCAATTTCGAC
  AGGCCTTGTTTAGTTCC AAAA ATTTTGCAAAATT     TG AGCTT    GTTTGT  ATT G  ACAA                                                        
  ||||||||||||||||| |||| |||||||||||||     || |||||    ||||||  ||| |  ||||                                                        C
  TCCGGAACAAATCAAGG TTTT TAAAACGTTTTAA     TC TAAGG    GGCAGT  AGC T  GAAA                                                        
AA                 G    T             -AAAG  -     ----      GT   - TA    TCTGTGTACGTATTTCATAATTTATATCTGTTTTTATTTTTGATTAACGTGTCAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3