SE2851036

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10041
  • Sorghum bicolor
  • SE2851036
  • PIF/harbinger
  • To2
  • chromosome_10:2880907-2881380
  • TTA
  • AGGCCTTGTTTAGTTCCCAAAAATTTT

Secondary structure and sequence

TSD    TIR
5'



3'
TT                C          GCAAAACTTT    --A   T                  A A                                                      G CAG    GAC    C           A        G   ATA   A A    A   --A       C        ATAC  --  A  --  C     GCAAAAAATTTTGAAAGTAAACAA
  AGGCCTTGTTTAGTTC CAAAAATTTT          TCAA   TTC CTGTCACATCGAATCTTT G CGTATGCATGGAGTATTAAATATAGATGAAAATAAAAACTAATTATACAGTTTG T   AATT   GAGA GAATCTTTTGA CCTAGTTA TCT   ATT G CAAT TTT   TCAAATA AAACGAAA    TA  CT TT  CA GTTTT                        
  |||||||||||||||| ||||||||||          ||||   ||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |   ||||   |||| ||||||||||| |||||||| |||   ||| | |||| |||   ||||||| ||||||||    ||  || ||  || |||||                         
  TCCGGAACAAATCAAG GTTTTTAAAA          AGTT   AAG GGCAGTGTAGCTTAGAAA C GCGTACGTACTTCGTAATTTATATCTGTTTTTATTTTTGATTAATGTGTCAAAT G   TTAA   CTCT CTTAGAAAACT GGATCAAT AGA   TAA C GTTA AAA   AGTTTAT TTTGCTTT    CG  AT CA  GG TTTTT                        
AT                C          ----------    CTA   -                  C A                                                      G ACA    ACA    A           C        G   CAC   C C    C   AAC       T        ---A  AT  -  TC  -     GATTTTAAAAATCCTTGATTCCGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End