SE2851041

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10046
  • Sorghum bicolor
  • SE2851041
  • PIF/harbinger
  • To1
  • chromosome_2:9494946-9495196
  • TAA
  • AGGCCTTGTTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
 TA               CACC      TCCAA        CA   T   CC   A ATCGAATCTTGCGACACATGCATGAAGCATTAAATATAAACAAAAACAAAAACTAATTACACAGTTTGTCTGTAAA
   AGGCCTTGTTTAGTT    CCGAAA     AAAGTTTT  AGA TTC  GTC C                                                                            
   |||||||||||||||    ||||||     ||||||||  ||| |||  ||| |                                                                             
   TCCGGAACAAATCAA    GGCTTT     TTTTAAAG  TCT AAG  CGA T                                                                            
AAA               ----      -----        --   T   --   - GACATCGTAAAAGCAAAAATAAACTGTTTATAACAGGTTAATATTTGATTGATCCTAGTTTTCTAAGCAGAGTGCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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