Plant MITE

SE2831046

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10051
Sorghum bicolor
SE2831046
hAT
Hat68
chromosome_2:7932107-7932286
GCATGAAT
CATGAATCATGGTTTTTGAGG

Secondary structure and sequence

TSD TIR

5'

3'

  G    AA               -----CATC    ---  TCATC   TAGGTGTTGAGGCGTACCCCAGGCGCCGCAGGACACCACAGGGTTTTA
   CATG  TCATGGTTTTTGAGG         GCCT   AG     GCC                                                
   ||||  |||||||||||||||         ||||   ||     |||                                                G
   GTAC  GGTACCAAAAACTCC         CAGG   CC     GCG                                                
TAA    --               ACAACGCCA    ACA  -----   ACCCTCATGTGGACCTGCGGATCCTCTACGGATCCTCTATACCGCCTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2831046

GCATGAATCATGGTTTTTGAGGCATCGCCTAGTCATCGCCTAGGTGTTGAGGCGTACCCCAGGCGCCGCAGGACACCACAGGGTTTTAGTTCCGCCATATCTCCTAGGCATCTCCTAGGCGTCCAGGTGTACTCCCAGCGCCACAGGACACCGCAACACCTCAAAAACCATGGCATGAAT

Copy Cancel