Plant MITE

SE2851048

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10053
Sorghum bicolor
SE2851048
PIF/harbinger
To2
chromosome_7:13300672-13300920
CAA
GGCCTTGTTTAGTTCC

Secondary structure and sequence

TSD TIR

5'

3'

CAA                AAAATTTTTT    AAT   CA  GT GCACTTTCGTTTGTATTTGACAAATATTGTCCAATCATGGACTAACTAGGCTTAAAAGATTCGTCTCGTCAATTTCGACCAAACTGT
   GGCCTTGTTTAGTTCC          GGGA   CGA  CT  A                                                                                       
   ||||||||||||||||          ||||   |||  ||  |                                                                                        
   CCGGAACAAATCAAGG          ACTT   TTT  AA  A                                                                                       
AAC                ----------    ---   --  -- ACGTTTTAAAAAGTCTAAGAGGCAGTGTAGCTTAGAAATCTGCGTACGTACCTCATAATTTATATCTGTTTTTATTTTTGAATAACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851048

CAAGGCCTTGTTTAGTTCCAAAATTTTTTGGGAAATCGACACTGTAGCACTTTCGTTTGTATTTGACAAATATTGTCCAATCATGGACTAACTAGGCTTAAAAGATTCGTCTCGTCAATTTCGACCAAACTGTACAATAAGTTTTTATTTTTGTCTATATTTAATACTCCATGCATGCGTCTAAAGATTCGATGTGACGGAGAATCTGAAAAATTTTGCAAAATTTTTCAGGAACTAAACAAGGCCCAA

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