Plant MITE

SE2811052

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10057
Sorghum bicolor
SE2811052
Tc1/Mariner
St6
chromosome_6:53666871-53667130
TA
TACTCCCTCTGTCCCTGAAAGCTTCAACTTCTA

Secondary structure and sequence

TSD TIR

5'

3'

    C   C     C        T         CAATCCG G C   C        C             C                 C  T      GACATAAAATA      TT  AAA     ------    TAT
TACT CCT TGTCC TGAAAGCT CAACTTCTA       T T AGT AAACTTTT TAACTTTGACCAA TTTATAGAAAAAAGCAT AA ATTTAT           AGTATC  AT   AATAT      ATTC   
|||| ||| ||||| |||||||| |||||||||       | | ||| |||||||| ||||||||||||| ||||||||||||||||| || ||||||           ||||||  ||   |||||      ||||    
ATGA GGA ACAGG ACTTTCGA GTTGAAGAT       A A TCA TTTGAAAA GTTGAAACTGGTT AAATATCTTTTTTTGTG TT TAAATA           TCATGG  TA   TTATA      TAAG   
    A   T     -        C         CTCAACA G T   A        T             T                 A  C      -----------      TT  --A     ATAATC    TAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2811052

TACTCCCTCTGTCCCTGAAAGCTTCAACTTCTACAATCCGTGTCAGTCAAACTTTTCTAACTTTGACCAACTTTATAGAAAAAAGCATCAATATTTATGACATAAAATAAGTATCTTATAAAAATATATTCTATAATGAATCTAATAATATTAATTTGGTACTATAAATCTTAGTGTTTTTTTCTATAAATTTGGTCAAAGTTGTAAAAGTTTAACTTAGAACAACTCTAGAAGTTGCAGCTTTCAGGACATAGGAAGTA

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