SE2811055

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10060
  • Sorghum bicolor
  • SE2811055
  • Tc1/Mariner
  • St9
  • chromosome_3:58681836-58682099
  • TA
  • TACTCCCTCCATCTCAAATTATAAGTCATTTCAAGAATTTTTTGGAGAGTCAAAGCATATAAAGTTTGACCAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
                    A                 TTT         C    C  ATA             TTTA     TAC   A    -CA             -   - GTATCATTAGATTATTCAT
TACTCCCTCCATCTCAAATT TAAGTCATTTCAAGAAT   TTGGAGAGT AAAG AT   AAGTTTGACCAAA    TATAG   AAT ATAA   TTTATGATATCAA CTA A                   
|||||||||||||||||||| |||||||||||||||||   ||||||||| |||| ||   |||||||||||||    |||||   ||| ||||   ||||||||||||| ||| |                   T
ATGAGGGAGGTAGGGTTTAA ATTCAGTAAGGTTCTTA   AACCTTTCA TTTC TA   TTCAAACTGGTTT    ATATC   TTA TGTT   AAATACTGTAGTT ATC A                   
                    C                 --T         A    T  GAG             --TA     TTT   A    TTA             T   T TATGATACTTTTATATTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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