Plant MITE

SE2811060

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10065
Sorghum bicolor
SE2811060
Tc1/Mariner
St9
chromosome_9:7546284-7546546
TA
TACTCCCTCCATCCCAATTTATAAGTCATTCCAAGAATCTTGGAGAGTCAAAACAT

Secondary structure and sequence

TSD TIR

5'

3'

                 T                                  A   -CTCAA         ----C     -   AAAAATTAGAAAGATTTATGACATCAAATAGATATTACTATGAAAATAT
TACTCCCTCCATCCCAA TTATAAGTCATTCCAAGAATCTTGGAGAGTCAAA CAT      TTTGACCAA     GTTAT AGA                                                 
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||      |||||||||     ||||| |||                                                 A
ATGAGGGAGGTAGGGTT AATATTCAGTAAGGTTCTTAGAACCTTTCAGTTT GTA      AAACTGGTT     ATACT TTG                                                 
                 T                                  C   AATTTC         TAAAT     A   TATTATTGTAAATACTATGGTTGATTCATAGTAATCCAAAAAGTAATCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2811060

TACTCCCTCCATCCCAATTTATAAGTCATTCCAAGAATCTTGGAGAGTCAAAACATCTCAATTTGACCAACGTTATAGAAAAAATTAGAAAGATTTATGACATCAAATAGATATTACTATGAAAATATAACTAATGAAAAACCTAATGATACTTAGTTGGTATCATAAATGTTATTATGTTATCATATAAATTTGGTCAAACTTTAAATGCTTTGACTTTCCAAGATTCTTGGAATGACTTATAATTTGGGATGGAGGGAGTA

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