SE2851067

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10072
  • Sorghum bicolor
  • SE2851067
  • PIF/harbinger
  • To14
  • chromosome_8:52308283-52308532
  • TTA
  • AGGCCTTGTTTAGTTCCCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
 TT               CC   AATA           --TTCTC     CCCCATCACATCTAATCTTGTGGCACATACATGAAGTACTAAATATAGATAAAAGAAATAACTAATTACACAGTCTA
   AGGCCTTGTTTAGTT  CAA    TTTTGCAAAAT       AGATT                                                                             
   |||||||||||||||  |||    |||||||||||       |||||                                                                              
   TCCGGAACAAATCAA  GTT    AAAACGTTTTA       CATCG                                                                             
GAT               -A   AAAA           TCCTTAT     TAAAAGTAAACATAAACTGTTTATAACAGGCTAGTATCTGATTGATCCGAGTTTTCTAAGCAGAGCGTTTAATGTCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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