SE2851069

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10074
  • Sorghum bicolor
  • SE2851069
  • PIF/harbinger
  • To1
  • chromosome_1:70294179-70294417
  • TAA
  • AGGCCTTGTTTAGTTTGCAAAATTTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                      T     TGTTTTTG    CTGTAGCACTTTCGTTTTTATTTGACAAACATTATCTAATTATGGAGTAACTAGGCTCAAAAGATTCATCTCACAAATTAC
  AGGCCTTGTTTAGTTTGCAAAA TTTTT        GCTA                                                                                 
  |||||||||||||||||||||| |||||        ||||                                                                                 A
  TCCGGAACAAATCAAGTGTTTT AAAAA        TTCT                                                                                 
AA                      T     --------    AAGAGGCAGTGTAGCTTAAAAACCAGCGTACGTACCTCATAATTTGTATCTGTTTTTATTTTTGATTAACATGTCAAATTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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