SE2851070

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10075
  • Sorghum bicolor
  • SE2851070
  • PIF/harbinger
  • To1
  • chromosome_1:61745865-61746112
  • TAA
  • AGGCCTTGTTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA            GTTCCCACCAAAAACTAAAAACTTTTT       TCCGTCACATCGAATCTTCCGGCACATGCATAGAGCATTAAATATAGATGAAAACAAAAACTAATTGCACAGTTTGTCTGTAAATTGTG
  AGGCCTTGTTTA                           AAGATTC                                                                                         
  ||||||||||||                           |||||||                                                                                          
  TCCGGAACAAAT                           TAGGTTT                                                                                         
AA            --------------------------A       TAAAAAACCTAAAAACTGTGACATCGTAAAACAAAAATAAACTGTTTGTAACAGATTAGTACCTCATTGATCTGAATTTTCTAAACAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End
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