SE2851073

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10078
  • Sorghum bicolor
  • SE2851073
  • PIF/harbinger
  • To12
  • chromosome_2:59151000-59151443
  • CTA
  • GGCCTTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
CTA               C  -     GAAAAGTTTTCGAAACTGTAGCACTTTCGTTTTTATTTGACAAACATTATCCAATCATAAAATAACTAGGCTTAAAAGATTCATCTCGTGATTTACAGGTAAACTGTGTAATTATTTTTTATTTTCGTCTATATTTAATACTCCATACATGTGGCGTAAGATTCGATGTGACGAAGAATTTTGAAAAGATTTTGCT
   GGCCTTGTTTAGTTC GA AAACT                                                                                                                                                                                                    
   ||||||||||||||| || |||||                                                                                                                                                                                                     
   CCGGAACAAATCAAG TG GGTTT                                                                                                                                                                                                    
ATC               -  T     TTCGTTTTAGAAAAATTTTAAAAAGCAGTGTAGCTTAGAATGCGGTGTACATATCTCATAATTTATATCTGCTTTTATTTTTTATTAATGTGTCAAATGGACATTTAGTGCTCTACTTAGAAAATTCGGATCAATAAAATACTAACCTATTACAAACAGTTTATTTTTGCTTTCACGATGTCAAAGGTGTGGTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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