SE2851075

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10080
  • Sorghum bicolor
  • SE2851075
  • PIF/harbinger
  • To4
  • chromosome_4:56364804-56365050
  • TAA
  • AGGCCTTATTTAGTTGCAAAAAAAATTACAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA       A    G  GC     AAA       ATAGAC   - TA    TTTC      -     ATAAATATTGTCCAACCATAGACTAACTAGGCTCAAAAGATTCGTCTCGCAAATTACAGGCA
  AGGCCTT TTTA TT  AAAAA   TTACAAA      ACT A  GCAT    GTTTGT ATTTG                                                              
  ||||||| |||| ||  |||||   |||||||      ||| |  ||||    |||||| |||||                                                              A
  TCCGGAA AAAT AA  TTTTT   AATGTTT      ATA A  AGTT    ACGAGG GTGTA                                                              
AA       C    G  GA     -AA       -----A   A --    --TA      A     GCTTAGAACGCCGTGTACATACCTCGTAACTTATATCTATTTTTTTATTGATTAACGTGTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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